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Journal Publications

2023

[22] Haonan Zong, Celalettin Yurdakul, Jian Zhao, Zian Wang, Fukai Chen, M. Selim Ünlü, and Ji-Xin Cheng, “Bond-Selective Full-Field Optical Coherence TomographyOptics Express, 31 pp.41202-41218 (2023).

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[21] Jian Zhao (Co-corresponding author), Lulu Jiang, Alex Matlock, Yihong Xu, Jiabei Zhu, Hongbo Zhu, Lei Tian, Benjamin Wolozin, and Ji-Xin Cheng, “Mid-infrared Chemical Imaging of Intracellular Tau Fibrils using Fluorescence-guided Computational Photothermal MicroscopyLight: Science & Applications, 12, Article number: 147 (2023).

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[20] Xiaowen Hu, Jian Zhao (Corresponding author), Jose Enrique Antonio-Lopez, Rodrigo Amezcua Correa, and Axel Schülzgen, “Unsupervised Full-color Subcellular Image Reconstruction through Anderson Localizing Optical FiberLight: Science & Applications, 12, Article number: 125 (2023).

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[19] Xiaowen Hu, Jian Zhao (Corresponding author), Jose E. Antonio-Lopez, Stefan Gausmann, Rodrigo Amezcua Correa, and Axel Schülzgen, “Adaptive Inverse Mapping: A Model-free Semi-supervised Learning Approach towards Robust Imaging through Dynamic Scattering MediaOptics Express, 31, pp.14343 (2023).

 

2022

[18] Jian Zhao, Alex Matlock, Hongbo Zhu, Ziqi Song, Jiabei Zhu, Biao Wang, Fukai Chen, Yuewei Zhan, Zhicong Chen, Yihong Xu, Xingchen Lin, Lei Tian, Ji-Xin Cheng, “Bond-Selective Intensity Diffraction Tomography,” Nature Communications, 13, Article number: 7767 (2022).

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[17] Stefan Gausmann, Xiaowen Hu, Jian Zhao, MD. Selim Habib, He Cheng, Jose Enrique Antonio-Lopez, Xiaoming Yu, Rodrigo Amezcua Correa, and Axel Schülzgen, “Tuneable Dispersion and Supercontinuum Generation in Disordered Glass-air Anderson Localization Fiber,” Journal of Lightwave Technology, 41, pp. 2484-2493 (2022).

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[16] (Invited)Jian Zhao (corresponding author) and Mingsheng Li, “Lensless ultrafast optical imaging,” Light: Science & Applications, 11: 97 (2022).

 

2021

[15] Jian Zhao (corresponding author), Xiaowen Hu, Stefan Gausmann, Jose Enrique Antonio-Lopez, Rodrigo Amezcua Correa, and Axel Schülzgen, “Learning-Based Image Transport Through Disordered Optical Fibers With Transverse Anderson Localization,” Frontiers in Physics 9:593, DOI: 10.3389/fphy.2021.710351 (2021).

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[14] Lulu Jiang, et al., Jian Zhao, Ji-Xin Cheng, Leonard Petrucelli, Hu Li, Andrew Emili, Benjamin Wolozin, “Interaction of tau with HNRNPA2B1 and N6-methyladenosine RNA mediates the progression of tauopathy,” Molecular Cell, 81, 4209–4227.e12, (2021)

 

2020

[13] Ryan M. Hekman, et al., Jian Zhao, et al., Ji-Xin Cheng, Benjamin L. Wolozin, et al., Andrew A. Wilson, Andrew Emili, and Elke Mühlberger, “Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2,” Molecular Cell, 80, pp.1104-1122.e9 (2020).

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[12] Xiaowen Hu, Jian Zhao (corresponding author), Jose E. Antonio-Lopez, Shengli Fan, Rodrigo Amezcua Correa, and Axel Schülzgen, “Robust Imaging-free Object Recognition through Anderson Localizing Optical Fiber,” Journal of Lightwave Technology, 39, pp. 920-926 (2020).

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[11] Lulu Jiang, Jian Zhao (co-first author), Jixin Cheng, and Benjamin Wolozi, “Tau Oligomers and Fibrils Exhibit Differential Patterns of Seeding and Association With RNA Binding Proteins,” Frontiers in Neurology, 11:579434. doi: 10.3389/fneur.2020.579434 (2020).

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[10] Jing Zhang, Jian Zhao (co-first author), Haonan Lin, Yuying Tan, and Jixin Cheng, “High-Speed Chemical Imaging by Dense-Net Learning of Femtosecond Stimulated Raman Scattering,” Journal of Physical Chemistry Letters, 11, 8573–8578 (2020).

 

2019

[9] Jian Zhao (corresponding author), Yangyang Sun, Hongbo Zhu, Zheyuan Zhu, Jose Enrique Antonio-Lopez, Rodrigo Amezcua Correa, Shuo Pang, and Axel Schülzgen, “Deep Learning Cell Imaging through Anderson Localizing Optical Fiber,” Advanced Photonics, 1(6), 066001 (2019).

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[8] Jian Zhao (corresponding author), Mostafa Peysokhan, Jose Enrique Antonio-Lopez, Yangyang Sun, Behnam Abaie, Arash Mafi, Rodrigo Amezcua-Correa, Shuo Pang, and Axel Schülzgen, “A Path to High-Quality Imaging through Disordered Optical Fibers: A Review,” Applied Optics 58(13), D50-D60 (2019).

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[7] Hongbo Zhu, Shengli Fan, Jian Zhao, Xingchen Lin*, Li Qin, and Yongqiang Ning, “Development and Thermal Management of kW-Class High-Power Diode Laser Source Based on the Structure of Two-Stage Combination,” IEEE Photonics Journal 11(3), 1502510 (2019).

 

2018

[6] Jian Zhao (corresponding author), Yangyang Sun, Zheyuan Zhu, Jose Enrique Antonio-Lopez, Rodrigo Amezcua Correa, Shuo Pang, and Axel Schülzgen, “Deep Learning Imaging through Fully-Flexible Glass-Air Disordered Fiber,” ACS Photonics 5(10), 3930-3935 (2018).

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[5] Jian Zhao (corresponding author), et al., Rodrigo Amezcua Correa, and Axel Schülzgen, “Image Transport Through Meter-Long Randomly Disordered Silica-Air Optical Fiber,” Scientific Reports 8(1) : 3065 (2018).

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[4] Behnam Abaie, Mostafa Peysokhan, Jian Zhao, Jose E. Antonio-Lopez, Rodrigo Amezcua-Correa, Axel Schülzgen, and Arash Mafi*, “Disorder-induced high-quality wavefront in an Anderson localizing optical fiber,” Optica 5(8), 984-987 (2018).

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[3] Shengli Fan, Seth Smith-Dryden, Jian Zhao, Stefan Gausmann, Axel Schülzgen, Guifang Li*, and Bahaa E.A. Saleh*, “Optical Fiber Refractive Index Profiling by Iterative Optical Diffraction Tomography,” Journal of Lightwave Technology 36, 5754-5763 (2018).

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[2] Yang Wang, Tianyi Guo, Jialin Li, Jian Zhao, et al., Zenghu Chang*, et al., Daniel M Neumark, and Stephen R Leone, “Enhanced High-order Harmonic Generation Driven by A Wavefront Corrected High-energy Laser,” Journal of Physics B: Atomic, Molecular and Optical Physics 51(13), 134005 (2018).

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[1] Donghui Zheng, Lei Chen*, Jinpeng Li, Qinyuan Sun, Wenhua Zhu, James Anderson, Jian Zhao, Axel Schülzgen, “Circular carrier squeezing interferometry: Suppressing Phase Shift Error in Simultaneous Phase-shifting Point-diffraction Interferometer,” Optics and Lasers in Engineering 102,136-142 (2018).

2023
2022
2021
2020
2019
2018

Conference Publications

[16] Xiaowen Hu, Jian Zhao*, Jose Enrique Antonio-Lopez, Rodrigo Amezcua Correa, and Axel Schülzgen, “Imaging through Disordered Optical Fiber System Using Unsupervised Learning,” Conference on Lasers and Electro-Optics (CLEO) 2022, paper STu5P.4.

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[15] Xiaowen Hu, Jian Zhao*, Jose Enrique Antonio-Lopez, Youyou Cheng, Rodrigo Amezcua Correa, and Axel Schülzgen, “Stabilized Depth Cell Imaging through Disordered Fiber System with Semi-supervised Learning Algorithm,” Conference on Lasers and Electro-Optics (CLEO) 2021, paper FM3L.4.

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[14] Xiaowen Hu, Jian Zhao*, Shengli Fan, Jose Enrique Antonio-Lopez, Rodrigo Amezcua Correa, and Axel Schülzgen, "Learning-Supported Full-Color Cell Imaging Through Disordered Optical Fiber," Conference on Lasers and Electro-Optics (CLEO) 2020, paper SM2L.5.

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[13] Jing Zhang, Haonan Lin, Jian Zhao, Yuying Tan, and Jixin Cheng*, “High-Speed Multiplexed Vibrational Imaging by Femtosecond Stimulated Raman Scattering and Deep Learning,” Conference on Lasers and Electro-Optics (CLEO) 2020, paper AW3T.3.

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[12] (Invited) Jian Zhao*, Shengli Fan, Jose Enrique Antonio-Lopez, and Axel Schülzgen, “Deep Learning Imaging through Specialty Multi-mode Fibers,” Optical Fiber Communication Conference (OFC) 2020, paper W1B.1.

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[11] Paul Roth*, Gordon K. L. Wong, Jian Zhao, Jose Enrique Antonio-Lopez, Rodrigo Amezcua-Correa, Michael H. Frosz, Philip St. J. Russell, Axel Schülzgen, “Wavelength dependence of transverse Anderson localization in disordered glass-air fiber,” Sixth International Workshop on Specialty Optical Fibers and Their Applications — WSOF 2019, Proc. of SPIE 11206 1M-1.

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[10] Jian Zhao*, Yangyang Sun, Jose Enrique Antonio-Lopez, Rodrigo Amezcua Correa, Shuo Pang, Axel Schülzgen, “Cell Imaging Using Glass-Air Disordered Optical Fiber and Deep Learning Algorithms,” Imaging and Applied Optics 2019 (COSI, IS, MATH, pcAOP), Computational Optical Sensing and Imaging 2019, paper CW1A.2.

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[9] Jian Zhao*, Yangyang Sun, Jose Enrique Antonio-Lopez, Rodrigo Amezcua Correa, Shuo Pang, and Axel Schülzgen, “Robust Cell Imaging through Anderson Localizing Optical Fiber Based on Deep Learning,” Conference on Lasers and Electro-Optics (CLEO) 2019, paper STh3L.2.

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[8] Jian Zhao*, Yangyang Sun, Zheyuan Zhu, Jose Enrique Antonio-Lopez, Rodrigo Amezcua Correa, Shuo Pang, and Axel Schülzgen, “Randomly Disordered Glass-Air Optical Fiber Imaging Based on Deep Learning,” Advanced Photonics 2018 (BGPP, IPR, NP, NOMA, Sensors, Networks, SPPCom, SOF), Specialty Optical Fibers 2018, paper SoW1H.2.

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[7] Jian Zhao*, Yangyang Sun, Zheyuan Zhu, Donghui Zheng, Jose Enrique Antonio-Lopez, Rodrigo Amezcua Correa, Shuo Pang, and Axel Schülzgen, “Bending-Independent Imaging through Glass-Air Disordered Fiber Based on Deep Learning,” Imaging and Applied Optics 2018 (3D, AO, AIO, COSI, DH, IS, LACSEA, LS&C, MATH, pcAOP), Computational Optical Sensing and Imaging 2018, paper CW3B.6.

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[6] Jian Zhao*, Yangyang Sun, Zheyuan Zhu, Donghui Zheng, Jose Enrique Antonio-Lopez, Rodrigo Amezcua Correa, Shuo Pang, and Axel Schülzgen, “Deep-Learning-Based Imaging through Glass-Air Disordered Fiber with Transverse Anderson Localization,” Conference on Lasers and Electro-Optics (CLEO) 2018, paper STu3K.3.

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[5] Behnam Abaie, Mostafa Peysokhan, Jian Zhao, Jose E. Antonio-Lopez, Rodrigo Amezcua-Correa, Axel Schlzgen, and Arash Mafi*, “Nearly diffraction limited beam qualities in an Anderson localizing optical fiber,” Conference on Lasers and Electro-Optics (CLEO) 2018, paper STu3K.2.

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[4] J. E. Antonio-Lopez*, Jian Zhao, J. C. Alvarado-Zacarias, Joel Villatoro, Axel Schülzgen, and Rodrigo Amezcua Correa, “Dual-core fiber interferometer for sensing applications,” Fifth Workshop on Specialty Optical Fibers and Their Applications — WSOF 2017, Proc. of SPIE Vol. 10604 1060401-176.

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[3] (Invited) Jian Zhao*, Jose Enrique Antonio-Lopez, Rodrigo Amezcua Correa, Donghui Zheng, and Axel Schülzgen, “Image Transport Through Meter-Long Silica-Air Disordered Optical Fiber,” Fifth Workshop on Specialty Optical Fibers and Their Applications — WSOF 2017, Proc. of SPIE Vol. 10604 1060401-28.

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[2] Jian Zhao*, Jose Enrique Antonio-Lopez, Rodrigo Amezcua Correa, Arash Mafi, Marie Windeck, and Axel Schülzgen, “Image transport through silica-air random core optical fiber,” Conference on Lasers and Electro-Optics (CLEO) 2017, paper JTu5A.91.

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[1] Viktor O. Smolski, Sergey D. Gorelov, Jian Zhao, Jia Xu, Peter G. Schunemann, and Konstantin L. Vodopyanov*, “Frequency comb spanning 2.5-7.5 µm from a subharmonic GaAs OPO and its coherence properties,” Conference on Lasers and Electro-Optics (CLEO) 2015, paper STh1N.5.

Conference Presentations

[13](invited) “High-speed computational multiphoton imaging through scattering media,” SPIE Photonics West 2024, Multiphoton Microscopy in the Biomedical Sciences XXIV, paper 12847-12

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[12](invited) “Unsupervised Learning-Based Optical Fiber Bio-Imaging,” Lab-on-a-Fiber Incubator: Technologies, Applications, and Opportunities 2023 Optica Global Headquarters

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[11] “Volumetric bond-selective imaging and spectroscopic analysis of cellular Tau fibrils through a fluorescence-guided computational chemical microscope,” SPIE Photonics West 2023, Advanced Chemical Microscopy for Life Science and Translational Medicine, paper 12392-3.

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[10] “Bond-selective full-field optical coherence tomography,” SPIE Photonics West 2023, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XXVII, paper 12367-51.

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[9] “Bond-selective intensity diffraction tomography,” SPIE Optics+Photonics, Enhanced Spectroscopies and Nanoimaging 2022, paper 12203-29.

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[8] “Bond-selective intensity diffraction tomography,” SPIE Photonics West, SPIE BiOS 2022, paper 11973-24.

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[7] “Stabilized imaging through dynamic scattering media based on generative adversarial networks,” SPIE Photonics West, SPIE BiOS 2022, paper 11974-19.

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[6] (invited)“Bond-selective Intensity Diffraction Tomography,” 2021 New England Society for Microscopy (NESM) Fall Symposium.

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[5] “Deep learning for high-quality imaging and accurate classification of cells through Anderson localizing optical fiber,” SPIE OPTO 2021, Proceedings Volume 11703, AI and Optical Data Sciences II; 117030Q (2021).

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[4] “Deep-Learning-Based Fiber Optic Imaging System,” Arizona Photonics Days 2021.

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[3] “Optical diffraction tomography with deep-field match optimization,” SPIE BiOS 2020, Proceedings Volume 11249, Quantitative Phase Imaging VI; 112490E.

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[2] (Invited)“Fully-flexible glass-air disordered fiber imaging through deep learning,” SPIE Defense + Commercial Sensing 2019, Computational Imaging IV, Paper 10990-12.

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[1] “Enhancement of wavefront characteristics in fibers by Anderson localized modes,” SPIE OPTO (SPIE, 2019), Vol. 10935.

Patents

[2] “Bond-selective intensity diffraction tomography” (Filed on July 15, 2022, US Patent Application NO.: 63/389,582; Inventors: Ji-Xin Cheng, Jian Zhao, Lei Tian, Alex Matlock).

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[1] “Fiber imaging apparatus, methods, and applications” (May 03, 2022, Publication of US11321837B2; Inventors: Shuo Pang, Yangyang Sun, Jian Zhao, Axel Schülzgen).

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